PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G055800.1.p
Common NameSb08g004720, SORBIDRAFT_08g004720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 216aa    MW: 23095.9 Da    PI: 9.8274
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G055800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Sobic.008G055800.1.p 14 KGAWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                          79******************************99************97 PP

2Myb_DNA-binding61.22.2e-1967111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg++T+eEdel++++++ lG++ W++Ia +++ gRt++++k++w+++
  Sobic.008G055800.1.p  67 RGNFTQEEDELIIKLHQILGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                           89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.922961IPR017930Myb domain
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
SuperFamilySSF466891.73E-3013108IPR009057Homeodomain-like
PfamPF002492.1E-151461IPR001005SANT/Myb domain
CDDcd001671.92E-101661No hitNo description
PROSITE profilePS5129428.72862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2965117IPR009057Homeodomain-like
SMARTSM007174.8E-1866114IPR001005SANT/Myb domain
PfamPF002493.3E-1767111IPR001005SANT/Myb domain
CDDcd001676.81E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TQEEDELIIK LHQILGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLIARG  120
IDPRTHQPAS AGAVAPAPGA AASAAAPSSH RQHGDDKAAA VVRSSGCSSR DSSGDDDSTS  180
GSSVPHQHQL VVGGIDLNLS LSPPTSQPSS PAAAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569050.0AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene).
GenBankHQ8586920.0HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442905.11e-158hypothetical protein SORBIDRAFT_08g004720
SwissprotP813932e-90MYB08_ANTMA; Myb-related protein 308
SwissprotQ9SZP11e-89MYB4_ARATH; Transcription repressor MYB4
TrEMBLC5YSS21e-158C5YSS2_SORBI; Putative uncharacterized protein Sb08g004720
STRINGSb08g004720.11e-157(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-88myb domain protein 4